I use Mullvad and Transmission, and I generally never have issues seeding. I'm currently seeding a few torrents from 1337x, EZTVx, and some linux ISO images.
Whenever I grab FitGirl stuff, I'm usually scraping the Fucking Fast links and using this library to download them, so I can't speak to whether or not it's something with FitGirl (but I can't imagine it would be). Most likely some setting on your end.